Estimation of genetic erosion on Ethiopian tetraploid wheat landraces using different approaches


Ethiopian Institute of Agricultural Research (EIAR), Addis Ababa, Ethiopia
Faculty of Agriculture and Environmental Sciences, School of Plant Sciences, Haramaya University, Dire­Dawa, Ethiopia
International Center for Agricultural Research in Dry Area (ICARDA), Addis Ababa, Ethiopia

Abstract

The demand and use of improved crop varieties by farmers has increased in the central highlands of Ethiopia, where continuous loss of local traditional varieties has been occurring in the last two to three decades. The objectives of the study were to assess the extent of genetic erosion and perception of farmers and associated causes for the reduction of traditional farmers' varieties. Direct field assessment covering 56 wheat farms and a survey in which 149 farmers participated were carried out in three districts of central Ethiopia. Based on data collected during direct farm assessment, the loss of genotypes was found to be 88% in Ada followed by 80% and 60% in Lume and Gimbichu districts, respectively. The farmer survey indicated an even greater loss of diversity of100% in Ada followed by Lume (93%) and Gimbichu (67%). Diseases and pests as well as shorter growing seasons associated with climate change were identified as main causes for farmers to switch to modern varieties. The expansion of high yielding improved bread and durum wheat varieties also contributed to gradually replace local durum wheat varieties by local farmers of these districts. Overall, genetic erosion of tetraploid wheat varied among the three districts of central Ethiopia. Reductions in the number of farmers and area coverage in the study districts could be used as good indicators for the existence of genetic erosion.

Keywords

Direct farm assessment, Genetic erosion indicators, Genetic integrity, Landraces, Tetraploid wheat

Author contributions

A. Zemede proposed, designed, and conducted the trial, analyzed data, drafted and finalized the manuscript. F. Mekbib, K. Assefa and Z. Bishaw made valuable contributions to and commented on the final manuscript.

Conflict of interest statement

The authors declare that they have no competing interest.

Introduction

Ethiopia is the largest wheat producer in Sub-Saharan Africa with about 1.6 million ha of durum and bread wheat (Central Statistical Agency, 2017). Wheat is one of the major cereal crops in the Ethiopian highlands, which range between 6 and 16 N latitude, 35 and 42 E longitudes, and from 1500 m to 2800 m above sea level (masl). Ethiopia has already been identified as an important center of diversity for different crops. Durum wheat is a tetraploid wheat variety traditionally grown on heavy black clay soils (Vertisols) of the Ethiopian highlands between 1800-2700 masl, where it is mainly produced by small scale farmers. Durum wheat is suitable for manufacturing pasta products (e.g. macaroni, spaghetti); however, in Ethiopia it is also used for making “injera”, a white leavened Ethiopian bread made from grain flour, and other local foods. Durum wheat grown in Ethiopia is constituted by a few improved varieties and a large number of traditional farmers varieties, commonly referred to as landraces (Bechere, Kebede, & Belay, 2000; Bishaw, Struik, & Gastel, 2014; Eticha, Belay, & Bekele, 2006). Durum wheat is extensively cultivated and grown by a large number of farmers and a significant number of traditional farmers’ varieties have been recorded in the central highlands of Ethiopia in the past 20 to 30 years (Negatu, Mwangi, & Tesema, 1992). Statistics on durum wheat production in Ethiopia from the past decades are difficult to obtain, they are usually lumped with bread wheat in reporting. The total area under wheat production in 1983was reported to be 625,590 ha of which 60-70% was estimated to be used forthe production of durum (Tesema, 1991). The following decades saw a drastic reduction in area coverage for durum wheat which dropped to around 50% of total wheat production area (Gashawbeza et al., 2003). Recent reports indicated that the area coverage for durum has further declined to not more than 15-20% from a total 1.6 million ha of lands (Mengistu, Kidane, Fadda, & Pè, 2016).

Introduction of modern varieties, improved production practices and problems associated with biotic stresses like crop pests and diseases as well as abiotic stresses such as droughts in traditional farming systems were among the major problems faced by the farmers leading to gradual replacement of traditional farmers’ varieties. Genetic erosion is defined as “the loss of genetic diversity, in a particular location and over a particular period of time, including the loss of individual genes and the loss of particular combinations of genes such as those manifested in landraces or varieties” (FAO/IPGRI, 2002). It could be considered as a consequence of the loss of diversity in the farmer’s field and will have a major effect on the future crop productions and productivity for indigenous crop species of Ethiopia. The problem has been increasing and is expected to be more aggravated for durum wheat than other cereal crops.

Several research reports from survey studies and farmers’ discussion indicated loss of diversity on tetraploid wheat has increased faster than expected in different environments of Ethiopia. The reduction in number of farmers, traditional farmer varieties or landraces and area coverage confirmed the danger and extent of genetic erosion on tetraploid wheat, as reported in multiple studies. Teklu and Hammer (2006) reported genetic erosion of 88%, 100% and 78% for the durum wheat species Triticum durum, T. turgidum and T. dicoccon, respectively. In Harar Zuria, the same authors detected genetic erosion of 88.9 % for T. durum and 100% for both T. turgidum and T. dicoccon. In the western Shoa zone of Ethiopia, genetic erosion reached 75% and 62% for tetraploid wheat species in Ambo and Dandi districts, respectively (Geleta & Gausgruber, 2013). In a similar study farmers identified 26 tetraploid wheat land races (21 from Akaki and 17 from Ejere), which were once widely grown in the area and of which only six were currently available; the average loss of diversity was thus estimated to be 77% (Tsegaye & Berg, 2007). Besides primary sources collected from a survey using semi-structured questionnaires and farmers’ group discussions, this study also used direct field assessment to identify recently cultivated landraces and compare them to previously available landraces in the similar districts, calculating levels of genetic integrity and erosion based on the procedures of Hammer, Knüpffer, Xhuveli, and Perrino (1996). The reduction in numbers of farmers growing landraces and area of cultivation were identified as useful indicators for the existence of genetic erosion (Brown & Hodgkin, 2015).

The objectives of this present study were to calculate and estimate on farm genetic erosion and identify associated causes in three districts of central Ethiopia using different approaches. Results obtained from direct field assessments and observations as well as information collected from farmers’ interviews and discussions were used to investigate the current status of durum landraces and to determine trends based on the number of farmers using landraces and the area of cultivation of the landraces.

Materials and Methods

Study areas

The study was conducted in three districts of the central highlands of Ethiopia based on direct observation, a semi-structured survey questionnaire and group discussions. Direct observation was conducted across three different routes which covered Gimbichu, Ada, and Lume districts during the 2017 cropping season (Figure 1). A survey questionnaire and group discussions were conducted in Ada, Lume and Gimbichu districts of the central highlands of Ethiopia in 2018. The three districts were purposely selected to represent the durum wheat agro-ecology environment of the East Shoa Zone: 1) Ada represents a midland wheat growing agro-ecology area,where modern crop varieties are assumed to be dominantly cultivated; 2) Lume represents a midland area where both landraces and modern wheat cultivars are believed to exist due to interventions by the Ethiopian Biodiversity Institute to recover the status of local in situ conservation; and 3) Gimbichu district represents wheat growing agro-ecology at high elevation and is an area where durum landraces are still extensively cultivated.

https://s3-us-west-2.amazonaws.com/typeset-prod-media-server/0a619d30-8e23-415d-94eb-e97b4b4b87edimage1.jpeg
Figure 1: Travel routes for direct farm assessment.

Research methodology

Direct observations

Direct wheat field assessment and identification of species and varieties of species was conducted in November 2017 along three routes passing through major wheat producing districts in the central highlands of Ethiopia (Figure 1). The survey was made on 56 wheat growing farms at approximately three to five-kilometer intervals when the crop was observed. The different wheat species were classified into modern bread or durum and tetraploid landraces based on their spike characteristics and uniformity. The number of landraces available in 2017 compared to the landraces recorded in 1992 was the basis for calculating genetic integrity and genetic erosion. Modern wheat (bread and durum) and landraces area coverage was calculated as percentage of each wheat species area to the total wheat area of the 56 farms visited during direct farm assessment.

Survey study

A survey on perception on use of landraces and genetic erosion was carried out to collect data from149 farmers in three villages of the Ada, Gimbichu and Lume districts using semi-structured questionnaires between10 and 25 December, 2018.

Group discussions

Farmers’ group discussions were held in Ada, Gimbichu and Lume districts between 20 and 25 December 2018 to collect information about the past and current status of landraces and to identify causes why farmers stopped growing landraces in the area. Three group discussions in each district consisted of 12-15 systematically selected farmers from surrounding villages, also taking into consideration gender representation.

Data collection and summary

Genetic erosion was calculated according to the formula of Hammer et al. (1996): GE = 100% - GI, where GE is genetic erosion and GI is genetic integrity, which is given as: GI = N2/N1 x 100. The number of farmers cultivating landraces and their relative area coverage were determined. The number of landraces cultivated recently as compared to previous number was the basis for calculation of genetic erosion. In the present study, the number of landraces grown by the farmers 25 years ago (Negatu et al., 1992) was considered as N1 and the number of landraces recorded in 2017 represented N2.

Results

Direct observation

Genetic erosion occurred on tetraploid wheat after 25 years based on direct farm assessment (Table 1). The variation was significant on loss of diversity on tetraploid wheat at 0.01%. The average genetic erosion across districts was 75.8%, which is lower compared to previous reports (Geleta et al., 2013). The loss of diversity on tetraploid wheat was found to be the highest in Ada (87.5%) and lowest in Gimbichu (60%) based on direct field assessment (Table 1).

Table 1: Genetic erosion on tetraploid wheat since 1992 in three districts of the central highlands of Ethiopia

Districts

landraces cultivated in 1992

landraces cultivated in 2017

Genetic Integrity (%)

Estimated genetic erosion (%)

Gimbichu

15

6

40

60

Lume

15

2

20

80

Ada

16

2

12.5

87.5

The proportion of landraces compared to modern wheat varieties was lower in lower altitude than high altitude growing environments (Figure 2). In 2017 the proportion of landraces in altitudes above 2400m were 70% while below 2400m this dropped to about 30% compared to modern wheat.

https://s3-us-west-2.amazonaws.com/typeset-prod-media-server/0a619d30-8e23-415d-94eb-e97b4b4b87edimage2.png
Figure 2: The number of tetraploid wheat (DW), local landraces (LR) and modern wheat varieties (BW) grown in different altitude zones based on direct field observations in 2017.

Number of farmers and area of cultivation

Modern bread and durum wheat as well as tetraploid landraces area coverage were estimated based on random field visits and identification of wheat species found in the field and calculated as percentage of each wheat species area to the total wheat area in a given district.

In 2017 only 8.3% of farmers in Lume, about 23.5% in Ada and 40.7% in Gimbichu were growing local varieties. When the three districts were considered, only 24.2% of farmers were growing local durum wheat varieties. On average 24.5% of wheat growing area was occupied by landraces across the three districts compared to modern wheat varieties. The highest area coverage was in Gimbichu (52.3%) while the lowest was 2.5% in Lume (Figure 3).

https://s3-us-west-2.amazonaws.com/typeset-prod-media-server/0a619d30-8e23-415d-94eb-e97b4b4b87edimage4.png
Figure 3: The proportion of landraces (LR), modern bread wheat (BW) and durum wheat (DW) varieties by area coverage and number of farmers in three Ethiopian districts in 2017 based on direct field observations on 56 farms in the districts.

Farmers’ survey

In order to obtain a more pronounced picture of the estimated loss of genetic diversity in central Ethiopia, semi-structured interviews were conducted with 149 farmers from three communities in the three districts. Based on interviews with farmers, significant genetic erosion was observed in tetraploid wheat after 25 years (Table 2). The loss of diversity in tetraploid wheat reached up to 100% in Ada and was lowest in Gimbichu (67.7%), with an average of 87%, based on the survey.

Table 2: Genetic erosion of tetraploid wheat since 1992 in three districts of the central highlands of Ethiopia based on semi-structured interviews with 149 farmers.

Districts

Durum wheat varieties cultivated in 1992

Durum wheat varieties cultivated in 2017

Genetic Integrity (%)

Estimated genetic erosion (%)

Gimbichu

15

5

33.3

67.7

Lume

15

1

6.7

93.3

Ada

16

-

-

100.0

In the 2018 growing season only 7.3% of farmers in the Lume district but 68.4% in Gimbichu were maintaining landraces of wheat. None of the farmers interviewed in Ada district were growing wheat landrace varieties. A similar trend was observed in cultivation area of landraces compared to modern varieties. The sample area coverage was 13.5% in Gimbichu and only 1.5% in Lume. No farms were cultivating landraces in Ada district (Figure 4).

https://s3-us-west-2.amazonaws.com/typeset-prod-media-server/0a619d30-8e23-415d-94eb-e97b4b4b87edimage5.png
Figure 4: Percentage of landraces (LR) and modern bread wheat (BW) and durum wheat (DW) varieties by area coverage and number of farmers in three districts based on interviews with 149 farmers in 2018.

Group discussions

The reasons given by farmers on why they are currently not growing local varieties are presented in Table 3. The most common reason accounting for high losses in all three districts were identified as diseases and pests, mainly stem rust, followed by terminal drought associated with a short growing season. The data also indicated that the availability and supply of better yielding improved bread and durum varieties gradually replaced local varieties inducing farmers of these districts to stop or reduce growing local durum wheat varieties (Table 3). The expansion of high value crops like tef and chickpea was also mentioned as cause for losses of local varieties in Ada and Lume districts, whereas in Gimbichu water logging and the difficulty of using landraces for making local injera and bread due to its hard seed were raised as reasons for replacing landraces with modern wheat varieties. Similar findings and reasons were reported by Tsegaye et al. (2007) in studies conducted in Lume and Akaki districts of the central highlands of Ethiopia.

On the contrary, the existence of a short growing season resulted in change in crop variety from farmers’ to modern varieties that could be suited to early planting. Use of high amounts of fertilizer associated with growing modern varieties have resulted in shifting from landraces to modern varieties particularly in Ada and Lume districts where high genetic erosion was observed.

Table 3: Reasons for not growing local durum wheat landraces in 2018 in Ada, Lume, and Gimbichu districts, provided by farmers during the Group discussions.

Causes of genetic erosion

Ada (N=37)

Lume (N=55)

Gimbichu (N=57)

All (N=149)

Diseases and pests affecting landraces

15

48

36

99

Shorter growing season associated with climate change

13

27

21

61

Improved bread wheat

6

23

13

42

Improved durum wheat

4

15

20

39

Water logging

-

-

18

18

Unavailability of seed for the landraces

7

2

2

11

Utilization (durum landraces not suited for production of injera and bread)

-

-

6

6

Shortage of land and urbanization

5

-

-

5

Expansion of high value crops (tef and chickpea)

4

-

-

4

Discussion

The results indicated that on average 75.8% and 87% genetic erosion was observed on tetraploid wheat after 25 years based on direct farm assessment and survey study, respectively. The levels of loss observed from both approaches appear to be similar to that reported in Western Ethiopia (Geleta et al., 2013). The loss observed was higher in Ada and Lume, situated at lower altitude, than in the high altitude zone above 2400 masl of Gimbichu district, where significant areas of land are still used to grow landraces. This difference can be attributed to the fact that both Ada and Lume districts have similar agro-ecology, access to big market centers and are also near to the Debre-Zeit Agricultural Research Center where a lot of improved wheat cultivars are developed, demonstrated and distributed. Modern wheat and tef crops are more expanded (Assefa et al., 2015) and could also be major causes for loss of diversity in the Ada and Lume districts. The presence of higher diversity in Gimbichu district might be associated to the merits of landrace adaptation and yield stability (Berg, 2009). Similarly, (Tsegaye et al., 2007) reported 77% genetic erosion and relative diversity for tetraploid wheat in Ejere, a high elevation district of central Ethiopia.

Our study demonstrated a correlation between the extent of genetic erosion and altitude. This indicates the relative importance of focusing further landrace collection and conservation efforts on altitudes above 2400 masl to capture more diversity. The study further confirmed the existence of better occupation in terms of area coverage and maintenance of landraces by large numbers of farmers in Gimbichu as compared to Ada and Lume. This could be due to the expansion of modern wheat varieties at the expense of the landraces in the latter districts as illustrated in Figure 3 and Figure 4 and confirmed by farmers’ group discussions. (Negatu et al., 1992) reported that 64% of sample farmers grew local durum wheat varieties in the same districts of central Ethiopia. The low percentage of farmers currently growing local varieties in the three districts are likely the result of commendable expansion of well performing modern varieties.

The results found in the current survey and previous research reports were comparable to those obtained in direct farm assessment. The different approaches followed may account for the large variations observed on the extent of genetic erosion although the trends were similar between the altitudes. The findings of the study have a significant impact for in situ conservation of landraces for future use in breeding to combat the challenges of climate change. Farmers’ opinions gathered in group discussions indicated that drought contributed to high loss of landraces in Ada and Lume and the result contradicts the existing theory that landraces are well adapted and coevolved in the environment they originated.

The results contribute to the setting of targeted strategies in high altitude zones for in situ conservation and exploitation of landraces in future breeding programs. Future studies should take into account direct observations as alternative approaches to assess and estimate genetic erosion of tetraploid wheat and other indigenous crop species.